Teschendorff Lab
Our long-term interest and goal is to elucidate and understand the systems-biology of oncogenesis (i.e. why do specific cells turn cancerous), and in parallel, to help develop cancer risk prediction tools that enable P4 Medicine strategies. We are particularly interested in elucidating the role of epigenetic changes in cancer development. To address these goals, we are using computational methods to (1) help map DNA methylation alterations that accrue in normal cells as a function of age and exposure to major cancer risk factors, and (2) to help understand how these epigenetic alterations may lead to cancer development. As cell-type heterogeneity presents a major challenge, we are particularly interested in developing statistical methods to help dissect cell-type heterogeneity in both single-cell as well as bulk-sample contexts. Since age is the major risk factor for most cancers, we are increasingly also interested in understanding aging and the role that epigenetic clocks, notably mitotic clocks, play in aging, cancer risk and cancer prevention. We are adapting and pursuing methods from network/complexity science (network physics & graph theory), statistical mechanics, signal processing and machine learning, increasingly in the context of integrative multi-omic data.

Andrew E Teschendorff has a current h-index of 84 and in 2023 was awarded a Clarivate Highly Cited Researcher Award.

Key papers
Quantifying the stochastic component of epigenetic aging
  Nature Aging  2024
A pan-tissue DNA methylation atlas enables in silico decomposition of human tissue methylomes at cell-type resolution
  Nature Methods  2022
Statistical mechanics meets single-cell biology
  Nature Reviews Genetics 2021
Avoiding common pitfalls in machine learning omic data science
  Nature Materials 2019
Identification of differentially methylated cell types in epigenome-wide association studies
  Nature Methods 2018
Statistical and integrative system-level analysis of DNA methylation data
  Nature Reviews Genetics 2018
Single-cell entropy for accurate estimation of differentiation potency from a cell's transcriptome
  Nature Communications 2017
Correcting for cell-type heterogeneity in epigenome-wide association studies: revisiting previous analyses
  Nature Methods 2017
Misc